Scaffold Ga0115570_10084940

Overview

Basic Information

• Taxon OID: 3300009496
• Scaffold ID: Ga0115570_10084940
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1578
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024584	Metagenome	205	N
F050674	Metagenome	145	N
F060351	Metagenome	133	N
F087764	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115570_100849402	F060351	N/A	MTTKYDDMVWKILCGMPIEVFDEDDDTVWENETWELVKTRTEGDYKDSRAIGSANLITALNMVHQRLLVDGTVSDDITALSHDIFNNILEKFTKDKLIRKRPENIRKTFQLV*
Ga0115570_100849403	F024584	GAGG	MYFKLVSKNGYRDLVRNARRICISQLSEEEKSAAFVELYEILKDKLFESTRSLNVEAAYADRCIHWNQRDIDQIKPVTTTRNPWLRFKREFEQCLGGKMPSKNIEIALAWFYAAPYRDDWIAS*
Ga0115570_100849404	F050674	AGAAGG	MDRVVNPLNAIGYSDWGIKRTIREAENVSRWNPWKCHEWMEEARDRMDLDNLFHEEYDSAVRRINAHWRMLPRFRHHNPDEFWKRDKVSYPPMYLELMVDDSDW*
Ga0115570_100849405	F087764	AGGA	MKRPTLSETKTFFYQNAPFVMDEYEDMKQDYGEFFAARYIIEILIDYNKNEKEASNG*