Scaffold Ga0115570_10082183

Overview

Basic Information

• Taxon OID: 3300009496
• Scaffold ID: Ga0115570_10082183
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120524
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1613
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F041145	Metagenome	160	N
F059445	Metagenome	134	Y
F098210	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115570_100821832	F041145	GAGG	LSKPANISHNNLVKKLEMLVKLCEETEPTPKQLLKMSGEKKADVTDLFTPEMIDAKFYLQEVKAEDYDSYSVIDIMKGCNTIWRWRLKVKKEGWPDINGIEYICGEFLKKNQKIAAIKKYRQYMIDRGKDVGLKESKEWADKLSIKMGLTN*
Ga0115570_100821833	F059445	GGAG	MNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNDNQLKDVLGNTILDDIEAKHPRPVWKEEGDEEEIKAIKSLMDGNIAIA*
Ga0115570_100821834	F098210	N/A	MVTLPLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFDFDDNYKVRPRTNIERELDKLADLNSKEKDLPVGGDDGQEVFNSQLNQLVWDLGLSLPSWDDDVNNERNNNNDKT*
Ga0115570_100821835	F012123	AGGA	MIKRNPCRVKKTTYTDIGVETIEVRGYAQERKTHDGIESIFVMEGGDTGIGYWYPKNEVRLVHGKWKNKTSEPS