Scaffold Ga0115571_1026801

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1026801
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2863
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053967	Metagenome / Metatranscriptome	140	N
F056582	Metagenome / Metatranscriptome	137	Y
F057337	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_10268012	F057337	N/A	MTYSELSKLSISELRNLNSMVIETIKSKKSLLALETKDSLYVGAMVSVDHRKLAGHELKITKINRTKAVCEMINGTGSYNVPLNMINIIKE*
Ga0115571_10268013	F056582	N/A	MARFKTYKIENTPTDSLPEMVTISKKVKGEIFEKKFISVDKAKAWIEFGAAYKLIANGAKKVKGELSSIGLISDTAW*
Ga0115571_10268014	F053967	GGA	MVKFDPNNELNEKELELLGESNFDDFLDYLDQKSKHLKTLTRPLSSYMSKRYSSISTMSQGKELSIEQIKKAGDIGKQNDKEEFDKIRERFEEMEKNDPKYKDEGIKNIKTHRSQWFD*