Scaffold Ga0115571_1026424

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1026424
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2892
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F005591	Metagenome / Metatranscriptome	395	Y
F010532	Metagenome	302	N
F028971	Metagenome / Metatranscriptome	190	Y
F067760	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_10264241	F010532	AGGAG	MNRTLYKKLEDICAREYIINKLSANKFRTFVDFLYDDIRTWDKPMNVSEIDIIHRIEEHMSYMVSSYLTKPYESTSSDEQALRGA*
Ga0115571_10264242	F067760	N/A	MKIRRIDMFIMRKYGDYCDESLRYNDIQKTFQAWKDDNIIELVKDYKEYRRILRYGS*
Ga0115571_10264244	F003051	GAGG	MKTKILKSKVVIDMSVSEYDTLFKYIGKLETMLNTLHETNDLWLSDVHNLSSLKWELVEMLDAEWNPDTYRYVKRGAK*
Ga0115571_10264247	F028971	GGAG	MVEIKDTELTPMTKEEFRAWEDYVRKYNEDNPEDQICYELTWNKDEYKVKLLNLKVDNEG
Ga0115571_10264248	F005591	GGAGG	MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIKIITRLNKEQKKQALDELWEDLQSAIQFTRDRNNTRRRQKRLDKKVNL*