Scaffold Ga0115571_1020382

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1020382
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3398
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009922	Metagenome	311	Y
F071638	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_10203825	F009922	AGGAG	MENTFDINSFDKDRTGAPASFKQCQAIGYKFAKKGETMNWKLQKQIQGCLYGLAKEQRLTFKKAHQLLQGKTLPKVYFDKINLYLQENS*
Ga0115571_10203826	F071638	AGGAG	MDIENNIKKFNSNEKARRYIKELGFNLKDCHCFKEDKSFLYTKKFSKQQVYLRSTYDFFSAGSMEMGTVWTVQQF*