Scaffold Ga0115571_1009059

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1009059
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5612
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F003365	Metagenome / Metatranscriptome	491	Y
F019967	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_10090592	F019967	GGA	MIKVKLEANEVELALNVASKRFIGNLKMGKGFSYGYQGDYRKQIADSFLGALSEVAYAKAFNKFYNGSYTDNLERYSDSDFQGNIEIRGQEKKDFNFLIIRPGEKKGKYILIVHEGNFEFSIMGWFPFTQDMPERLTNFGYSQRPAVYKVDIKELYNINDL*
Ga0115571_10090593	F003365	AGG	MLKTIGKEWNLKEDGGCFTATHLSPSQLNKSLDMWFNDYVVLTAEQRKSLFGNLNMDIGAIVGQAVQDLIVHNLTLEEVMKGKK*
Ga0115571_10090596	F002495	GGAGG	MSENGNAKQKDWVLFEFQPDNPKSIKIDFSGNVNLDNDKKGTILGVKGSSKDGNTKFIKVFAQVGVLFRSDDGKFTGDMNYPEAGGQKGLIGWLNDTGTILSGYKNEYKPKQPKAESKEIPF*