Scaffold Ga0115571_1005446

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1005446
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7622
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F013099	Metagenome	274	Y
F062168	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_100544614	F062168	GGA	MKTNELKNFLKDMGLESIHPKPSTRKPDYMQPGFYVDPRDANGEVQF*
Ga0115571_100544615	F013099	GGAGG	MNTVWILLWLVLVPENGVRYYHLGTYDNETLCKVGLRDAAVMVNETNETVQCIGVQVND*
Ga0115571_10054466	F004646	GGA	MGKVNSLFQDAQEAREDAQMVYAIADVPHGDFDNYETLNKLFHALVPHGWQNSSWKNDTCPSLLKEERHGNYCQIFVDYADPAMREDPEWPVLSYDCYDAEGMKTFHEEFDNVDKLIIYLTKRVN*