Scaffold Ga0115571_1000095

Overview

Basic Information

• Taxon OID: 3300009495
• Scaffold ID: Ga0115571_1000095
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 60232
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004345	Metagenome / Metatranscriptome	442	Y
F009597	Metagenome / Metatranscriptome	315	Y
F020507	Metagenome / Metatranscriptome	223	Y
F022641	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115571_100009516	F022641	AGGA	MIVKGILNIISAISLVTIICLGVAYLSFKNAFVFQDIMIEITNNPITNEKDIEFYMVGYKKHECNSTSVYGVAYAEDGSHSHRLDAFTKQYLRNVRPGEEVPNSWHMEVPDDMHEGGRYRVSMTGDFVCNYLIFTQEKSQTFDNILLIVEPRNK*
Ga0115571_100009554	F009597	N/A	MVCLDGKDDWIYITKQTENCWDIQPELFEDAHEAMEFAKTFQLPDKPENVMVVDYYEQI*
Ga0115571_100009556	F004345	GGA	MIEKIIVATTGIGYVTVGLMQWYKGSIPNGMIWIGYAFAQIGLWINLK*
Ga0115571_100009580	F020507	AGAAGG	MRAFLTIAFILLAPSAIANQNNDVIKYCIQNTSNYNQAASCYSDWRQGKNAQELAELRDFLKHNPRYRFPGQSLNRCWGKPREMPFESAYMERTGDGFRAGVNYKDTLPAGCYENAPWDNRDD*