Scaffold Ga0127412_10022647

Overview

Basic Information

• Taxon OID: 3300009492
• Scaffold ID: Ga0127412_10022647
• Source Dataset Name: Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 679
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: US Atlantic Margin
• Coordinates
  • Lat. (^o): 37.5409
  • Long. (^o): -74.10211667
  • Depth (m): .06 to .08

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015201	Metagenome / Metatranscriptome	256	Y
F056537	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127412_100226472	F015201	GGAGG	MNQALIVYLINQKKKQARKDVESKHAVTELKKQSAATF*
Ga0127412_100226473	F056537	N/A	MMNDIIYINRHILSVSIDTKAMTLVYRGCKYNQEDQAKANRNWWNLAHRPWLCLTYRNICYFPFVTGGQIK*