Scaffold Ga0127412_10001227

Overview

Basic Information

• Taxon OID: 3300009492
• Scaffold ID: Ga0127412_10001227
• Source Dataset Name: Marine sediment microbial communities from Chincoteague Deepwater methane seep, US Atlantic Margin - Chincoteague Seep MUC-5 6-8 cmbsf
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Oregon State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2221
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Methane Seep → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location

• Location Name: US Atlantic Margin
• Coordinates
  • Lat. (^o): 37.5409
  • Long. (^o): -74.10211667
  • Depth (m): .06 to .08

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055553	Metagenome / Metatranscriptome	138	N
F101060	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127412_100012271	F101060	N/A	MKTKHCGGCDQTKPVAQFANNKRAKDGRQYHCRECLNAYSVIRKAAI
Ga0127412_100012277	F055553	N/A	GIAYGFKTNAPIGIYVEPTTYVDDQFHVRPFEQSIENCLIVAHNGTLPIYLADNQDRFWIRDCNIQQHQGAQVGIKHGPPIQTGIIKQAPMANVYLADPKFLDLQMEGPHNAQRPQTAIFAAGNNIHMRGLNLYGWLQGPYLHGGMNRYVQVQVHKSNTHDGRQPLPLNEVCGVTLNKYLNGEVAECVGAGVASSPLPSPLNPFSRHVVQEXXXXTFGTHRKGEGLYGG*