Scaffold Ga0114925_10072375

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114925_10072375

Scaffold Ga0114925_10072375

Overview

Basic Information
Taxon OID	3300009488 Open in IMG/M
Scaffold ID	Ga0114925_10072375 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2126
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	near North Sumatra
Coordinates	Lat. (^o)	1.759	Long. (^o)	96.774	Alt. (m)		Depth (m)	1855
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028309	Metagenome	192	Y
F078572	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114925_100723753	F028309	N/A	MLTPFTHDWRPGDRVVSIAVRESVADTGLGTIQRVLLDRAIVLWDDGEQSEERLKDLIIAGYNESKIVKKADAYGHQSRELDFNTNWWGGSINLQEDISSELALNDRLIINKMLISGIPLDIDSAEGLKWGNFINEGFIQGS*
Ga0114925_100723754	F078572	AGGA	MRDAFVVRDQNGINEMIPSQKERPMAMGDGTFMSDNAFKESIPMMSYTPEELGINMAAYPMQTETAMQIAVQDKGQAGEMTSMTPEEEVTVQQSNNPYLAVVQQDEYDGGVQFNADNWVEDNSYIILKGLVLIGIGIYLGKNWF*

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