Scaffold Ga0114932_10229240

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10229240
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1124
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020461	Metagenome	224	Y
F028861	Metagenome	190	Y
F050670	Metagenome	145	Y
F057681	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_102292401	F057681	N/A	KKGKNKMLRKYTKKMFLDYASAFDYYDEMKETMQSWSLKQFHDFYDFTHYDWESGKQLKLNRKKK*
Ga0114932_102292402	F050670	N/A	MPIEHYKGLEICIMYNDNQKPYYIVCKEFKEDPFWEIGTTQYSTIKKAKEDINNKVYE*
Ga0114932_102292404	F020461	GGA	MYIDKYKVEIKGTKYHEKTDKKMTDQVLATYESNDGMNIKELANILEQLADSHQAHNNITFNIVMKQYDHD*
Ga0114932_102292405	F028861	GGA	MADRVIYKLTEYNSSTGEEKIIYSHMRQSLEEEMPTVSEDQEITEINFNANDMESLCNALNNSDIIED*