NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114932_10079229

Scaffold Ga0114932_10079229


Overview

Basic Information
Taxon OID3300009481 Open in IMG/M
Scaffold IDGa0114932_10079229 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002078Metagenome / Metatranscriptome596Y
F013820Metagenome / Metatranscriptome268Y
F022754Metagenome / Metatranscriptome213Y
F036736Metagenome / Metatranscriptome169Y
F048916Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0114932_100792292F036736GGAGMTDKLNEMLLGALAIAGTFITKRVFNNHDSLSDRITALEKTVVTKEDLNTIERNVEMIVTHLINKGDTP*
Ga0114932_100792293F013820AGGAGMIKTVIDFVDKMMPGHKTYAIMLIGIAMMVCQMMGYHQFDQEAWGVLGIGGAATWKMGQDRKKK*
Ga0114932_100792294F022754GAGMLVIPSPYKMVNWTVNQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNNKEMIFKSSETDCYAVYDLSSPTFIRHPDHWHPVEPPKSLKMNVGD*
Ga0114932_100792295F002078AGGAGMDIASMFEGQGWFEIAGQVVLVFTALTGALPDKFVQKIPILSTVWPIFNWLAGNVFNNINHPKGMAASADVEKEIDEAKAKVRARSGMPDVLDGM*
Ga0114932_100792296F048916GGAMGILSELAAPVANFGLGLYNADTYYSKECAWYEEVRMSQDTKQWLLQNNPPPIVSEDLAQVAKNNDIYKQVCDPKPEEE*
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