Scaffold Ga0114932_10051201

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10051201
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2655
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013777	Metagenome	268	Y
F023878	Metagenome / Metatranscriptome	208	Y
F038198	Metagenome	166	Y
F073669	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100512013	F013777	AGGAGG	MTKTFTMWGPTSIDHFKNLHDHYLKKEPIVHAYATPYNNDPMVGGNDAAMWSFVMHEKRDLERMAFKSYIHPQGDFQNGYYDICDIEKETFDCDNMKLGEVFPVILYAHHETLLTVGCVVKTSDHPDIHGKEQLALWIYYPSAENIESFDTASGHIYKEEKR*
Ga0114932_100512015	F038198	N/A	MALEKVTLKNVRVTLNFDIDLDTLKRYLETKERDFDDLMAIYDMISIQSDRLNEQGEPENIRAYFDLDPETFNLLEQQVKTDLKKSYVTDSDHPHLRRIK*
Ga0114932_100512018	F023878	N/A	MEIFIIVGGLYALYTVGMAIATELDYRESNRKNYHD*
Ga0114932_100512019	F073669	AGGA	MTEPNMKLLEVMRDEANLCYKNGDEENGNALVESIFSQIFPGLVEAAKNDPKIIYQLIIQANASNGVIAEHSKSILMYLKSKGVKF*