Scaffold Ga0114932_10038926

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10038926
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3109
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C345 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024923	Metagenome	204	N
F044487	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100389263	F044487	N/A	MSKDYEITYCTMECLEQTINILKEISKEYEWEDEQQYIKTIYMFSTLGYVMSNDEYKDEMELFFKILGKKIKENQDLIKEAKYYANIT*
Ga0114932_100389268	F024923	AGAAG	MSDQDDILIAEDWWLKPSLLPTSVWSYDKGRNGGYVADFKSVGRDLRLIGTKKQIKKWWRQTGVEVKDIWHTELTEQHKELYERNCKKLVVIRL*