Scaffold Ga0114932_10025428

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10025428
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4007
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F004988	Metagenome / Metatranscriptome	416	Y
F049295	Metagenome	147	N
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100254284	F049295	GAG	MFDEIEIEWIPEDTGAPYEVDMTKVEMDTPAHIVDKWCKDKYGHTNWARMGVMSPEELIGNPHDFDFDEGIIYFKNAHLV*
Ga0114932_100254286	F000720	GAGG	MTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGRQPEKRQRELSTDPYAMKE*
Ga0114932_100254287	F083388	GGAGG	MVGMLMQKRIANLEWVIKRCSPEFKEVWERKLEQLINRRVEMAHERMVENARRVH*
Ga0114932_100254289	F004988	N/A	MVKLVETICPRCNGNGYIVVQNDDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGKDGS*