Scaffold Ga0114932_10022406

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10022406
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4326
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015347	Metagenome / Metatranscriptome	255	Y
F021552	Metagenome / Metatranscriptome	218	Y
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100224063	F029468	AGGAGG	VKIRLKKQAEKDFDKADIEKKQLALSAACKDFVSEFIDCEGDVFYSTFSKASNAVWQYESSVRNSAMTKVGPEWDHDADVVGKWRYPHLRKDDD*
Ga0114932_100224064	F024807	GAG	MMTRRVMPFSLVFHDKDQQLTLALHDNPVILTRDEADALAFHLASFVEDMDSTRKPKPSVEGADIHAEVHGEMLVAQYDDDPNPYHGDYSED*
Ga0114932_100224066	F015347	N/A	MLLESASTECDEMHHDMSEDAKFPDMDTIYSAAFEMRRFADRLNHFADQLMIEYRKMDHHQYMIDLDDLRNESYVN*
Ga0114932_100224068	F021552	GGAG	MIRHWIGKSLSVCTKDILDGTINEEEVLLICTSTRHPFDDPSHFYDMRFFDSMEEASLLQRLWKQGRIHQPRMCSDTYNYGKEGPLFPYDNYRHKVWYSIKDQALTDLEDKPEEEYSEELEEAMKTILMSGER*