Scaffold Ga0114932_10015792

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10015792
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5410
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015849	Metagenome / Metatranscriptome	251	Y
F049926	Metagenome / Metatranscriptome	146	Y
F074769	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1001579210	F049926	GGAGG	MRIPEAGTTMGKCTFCKDYIIQGAGNRAKHATVKSGHWLCGDCILGMKDIVISAFLDYQETAEQEKEELLKEVKKYGWSVDPETGKLRKL*
Ga0114932_100157923	F015849	AGGAG	VTGIIDNTTDEARKQWCDLLHAGWMYHQQKVKEIASPIIGAEISDDQLFHMSISVAIQDAIALIQQMEAYGYFAEEGEEEELPQHKRGPAG*
Ga0114932_100157927	F074769	GGAG	MGNLADKRRLREEQGKPIHQGEVGITSKDEMMFIPFIQSGNPDEARPWLYKGYYSMPDGHINMELKRMEGQIELKVESIDNYKDYINIAVEAFIKKVYEDSVHEAETITVEKHETEVEILKKEIIRLKLDAENANKVREEAKAVLESMTQQRGMTRE*