Scaffold Ga0114932_10011997

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10011997
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6519
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F005749	Metagenome	391	Y
F010325	Metagenome / Metatranscriptome	305	Y
F050426	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_100119971	F050426	N/A	IDISDIKNDDSEYLKESVKRLTEKIKQLKLTYAWKWGHAQDHEREIVKGMILQSLGLQQMKEKENG*
Ga0114932_1001199710	F005749	AGGA	MKKSWLLLMSFDEHDGSPNEIKTLYHNKTKKEMVKMMNLLQDMNEHLVLSLVQIDPTSTYEDIIRVDDSEMYFMDSKANWNNGKTYEELKEEAFEEMIMGSVLNGDMGFA*
Ga0114932_1001199715	F003091	AGGAG	MSTHPMKPITKPGEGKKRQKYVTQEQYLEERYQISAGLKGPKRLEGESFEDYQTRRKAENGLLREYLRGVWVKNED*
Ga0114932_100119973	F010325	AGG	MLRKDQVENQLDQLQLAVERLKSSLVVPTDPGDPGTPIQVVVNALQQIENQIDTLINLIQLED*