Basic Information | |
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Taxon OID | 3300009481 Open in IMG/M |
Scaffold ID | Ga0114932_10009035 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7909 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (68.75%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
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Location Name | Kolumbo volcano, Aegean Sea | |||||||
Coordinates | Lat. (o) | 36.5264 | Long. (o) | 25.4868 | Alt. (m) | Depth (m) | 470 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F010829 | Metagenome / Metatranscriptome | 298 | Y |
F051060 | Metagenome / Metatranscriptome | 144 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114932_1000903511 | F051060 | N/A | MDKLEHGTLLGKCALDGQPIYQGSGFRSIHSTVTNGKWISGDALLKLYQRCFEAFLAHNEDAEKEKQILLGKLEKYGWQTDPETGKLTKVLNRSE* |
Ga0114932_1000903514 | F010829 | GAG | MGNLADHRRLRKEQGLHEDDPGTGEYTKDELNYIPFLGNNPSEEKPALYTGRFNVSKSIIELEAKRSGGKLYLTCMADEKVHRAIFECVDRFVTAIFDGSAREIKEAEPEDSQIMKLRAELSQVTKEKKEMKDTLETLRKALHG* |
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