Scaffold Ga0114932_10007340

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10007340
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9168
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006773	Metagenome / Metatranscriptome	365	Y
F019253	Metagenome / Metatranscriptome	231	Y
F031893	Metagenome	181	Y
F059451	Metagenome	134	N
F079327	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000734013	F006773	GGTGG	MTNSIEIKTGLPWKNGRQSVEYFVEVGTTPYGKYGLYKEMVPVGTGSRGAHRAIAQEIKMSNPEIFENLELRQVISRG*
Ga0114932_1000734017	F019253	AGG	MNVATLNKFNNYMTQHTDKVPLLSVQSIEDKRFNVLREFLSQCFDDVEDNAWSVSSNLGKFVDSLSTMEQSDKDAMARLISKYEVKGTSSGISGERRYGYDRSRVDRSLIRRRRAN*
Ga0114932_100073405	F079327	GAGG	MKQNYYIYKLARQNEKTSYHFFDVVMGSGISRESIYYGLTQDPQSRLSKHRPKKGHDVSLTVLAQFDNPWEALELEASLVAEHYRKYGQEPECQGMANTGHRGA*
Ga0114932_100073407	F059451	AGGGGG	MLITYIKRAEEAPSLSREQLRNEANAYGNLRATIMAWDSLAKDSRNKTDWNNFAKYVLKEVQEMAEKIKEVENK*
Ga0114932_100073408	F031893	N/A	MKFEIELDKYDIGQMQKNRYGHNDTITYGYMLDIVHNIVDQIHDQL*