Scaffold Ga0114932_10005700

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10005700
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10936
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F004990	Metagenome	416	Y
F005431	Metagenome / Metatranscriptome	401	Y
F006892	Metagenome	362	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F015660	Metagenome	253	N
F046315	Metagenome	151	Y
F059875	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000570010	F011253	AGGTGG	MKDRKLELNNIIKNIAKNKSLPYANAITKIKKDRKGYFQAKDIKQKKQSLSTDRFQQYLKTIQEEENDT*
Ga0114932_1000570016	F015660	N/A	MPNKTKYSKELIDSIMKDLAEGISIKASLKNHSISWECFRKWLLDEKKYPSLRGKYTQAKQDGIEYSLSDAQSLINEAVQDSKFKEKTDLGSTHLIKEFISLAKWRAEKLAPKVYGKNDNLRVSGDKDSPLIVKWNG*
Ga0114932_1000570017	F005431	AGGA	MMDFDDEQKGYSAVIYIMESTNSVVVHFGGFNNISECRYFSTHIMEDFGIEQLLNVPQGVTVH*
Ga0114932_100057002	F006892	GGAGG	MSDTGIIIPLKERIRDLETINLAHQKKNGQLRQEIQDKDKLIKELQEKLNNPLNKMREQGKI*
Ga0114932_100057004	F046315	N/A	MNNSLNKKLIEYSANSGYNSNYIESYMTKNNLLPKEFRFRRSALDLLLKESNKKISDFIKDTYSPKEQKNKFAQISKILNPKKNAPKYFTENDLANDLAHWFNTFLNLDEVVSANYFVGDTVQIDCIGELFGNGQIGIHKIKDRHKINIHPKYASFQAVECLFEGKRGAMMLFKPSKTIDRNANNRSVICQDKKTKVVWFGFLEPQSNGKYNILDKSQSTGKTIGKLAENIQISWCAEVKAAYYPTIYNT*
Ga0114932_100057005	F059875	N/A	MKAIVLIFGVITNNGQIDLIKVPNSELKNLNSCEKAIETIAKWQLNPKSKPGNYEVWGFYTYKNRPIMLQYCTENGVYSG*
Ga0114932_100057006	F008915	N/A	MGFIVDNIVSLDLYEMQSASHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLRLQVRTQIPKNNNSLIIRPKAKPGEFYILVIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*
Ga0114932_100057008	F004990	AGCAG	MEFDMYGDPKKKCCGCENGADLKEGNKYYCCDHYALYVLRKPMSQIEKELNNFKE*
Ga0114932_100057009	F001839	N/A	MKYFEKVDKDLINNRALNSNEKLIYVICKSFENAPRGCRISHKYLMQRTGIKTKKTLIKCLDNLALFGLMARKQIGQGTCHYVFDKKTMQEYIRHNINKRKKISLRKNRQFKSYMNNLNDPQVIHINKFIKE*