Scaffold Ga0114932_10005444

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10005444
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11307
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F034394	Metagenome	175	Y
F042629	Metagenome	158	Y
F045428	Metagenome / Metatranscriptome	153	Y
F060433	Metagenome	133	Y
F087902	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000544411	F045428	N/A	MTTKVLALLALLSVGAFSAVYAETATVEVPFDSHGQSCSFDELAVEYHCVWQGMIPEPTFESMQEIRDLISADRYQQEIDRLNEEALAAIAEEKAKLTPNELVILEIENKLARGIATATDSVYMNLLKELDTCQQGMDKQTAPFQEAREFEISEFNLWKVNNVKYDGELGEIVMAIEECRAQHALKKVVGEGYSNMPTGDDDVQFSLLVEYEGIQAVPFEDYTATSKAVDMSAICDSNAFPDTHKAQHGCEVLYDGLTMDQVKRQNEVMFGTDGKIHYQSALLGKYHDYLNNNFRYATVEHKAFEEALAQPIAQEMIEENAFVQNAMRNE*
Ga0114932_1000544413	F087902	N/A	MTYSNHNVKDVTADGAVKAGHGVIVSVHVVKAGASGDKVVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIYAEVTGTGAKYLVVFK*
Ga0114932_1000544414	F034394	N/A	MVTTTTYCSVNDIIDFLRVPITSTTTPNKEMVRKIIARKEEEFDRRVGHTWKTKKITREVHDLPLLYTFGWGTPIFLQHRNIYELDTSQGDKIEIWKGESDSWENIVGQDQWYHAEYERGTLHLRGYLFTILRKNRVRVTYRYGGENFAGDTEIPLDVADAVIKMASIEIMNTSFRMDELPSGGSVSPSESKKYWQEDIETCINNRREVFVIP*
Ga0114932_1000544416	F042629	N/A	MAITTYDAVDDIISLIKTKWSNLRPPTISKVWDKRTVGFIDDRSDQVILSPKGEDINYFGLGGSAFWHDQMIEMEIRTYQDIDRHNSVVKEIVKIIKDNITGTTYTDLRVIGSFSKNYQYRNMFSYVVTISYRKSDPS*
Ga0114932_100054443	F001235	AGGA	LPTEVETNENANDMTKKLWEKHQSDEYTKINNYKEGVCLGCMKVDVAAATIADICGDCAGKKGREPLLAKVCDKYYGLCFFCNTYKFNIEQVNGRFCKTCHRRIANITKEYNAKGGFMKVDPFWVKMRKRHGKDWKNIMAGNKRSNRK*
Ga0114932_100054447	F060433	N/A	MEMSSIVEALSIAAILGMGGALYGFFRKMSNTQQDLCETVTRLQKTLIILAKAVDRQSNRLHPEEANSELDDLVKELLDK*