Scaffold Ga0114932_10005362

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10005362
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11413
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008152	Metagenome	338	Y
F052869	Metagenome	142	Y
F077804	Metagenome	117	Y
F089417	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000536218	F052869	N/A	MLTLIGAGCFSTGVYYTVNKFEEQVLKWDSNYKLITEKVYAFEKVSDPKTIRLYVNELNKILDDIDFLHTLIESGQIADAKLDDYLASKQSNVDELKETLSSITTEVDSMLTSSHDHMHLMVEELQDSVKTQLTNSTIEVSTEVNKLSSQFKEIKNQLDELNKVIDKIKNSKLSKHLK*
Ga0114932_1000536220	F077804	N/A	MKVNLPNHKYVIYERDIVDILIAFNDGNYEWILDFFETLTPVDGTDNSKTYSFEQLLANAGITFQGK*
Ga0114932_100053627	F008152	GGA	MSYDTLGWYKDQICRMTWDEILELMEERISNGSWNKFVESLGKPPHVIKHDHMLKEMNDAKV*
Ga0114932_100053628	F089417	AGGA	MPKFKQKSPVDSIIVDMILDHYNIQNLSGKKENLTGEDFNNICKDAEKIYFKTVLITKEPGVA*