Scaffold Ga0114932_10004976

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10004976
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12029
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F040325	Metagenome / Metatranscriptome	162	Y
F074009	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000497613	F040325	N/A	MARRKIGNSHTTICVTWEDKELFRKFAQFVKETKTGKLYESDSVLFHKLLQHYEKEHQKNETSNTTYPTKT*
Ga0114932_1000497615	F074009	N/A	MGTQIKAKYDGMCKLCGEEWSVGESIFYQKEPKAICRAKDCFEGQGGEFTPFKAGQKTLTGGYYGKTPIITKLPDVEVSTEVKKITEYWDQFFLVAHHKTKAVYPDEDVNGDRFGQIRSKMMDQLMSLIQMVKE*
Ga0114932_100049765	F001066	N/A	MDDSHDLFKIKSIDGKDVVSADKRKLISPFNSTKHFKAANIPALCDQCVYRSVADGGNGKCPKYEAGAVCAIREDFLKFINELDTRDPEDVKAMMDMLAKISFENVLMALTQAKMDGNIPDRNTKSEIKTLLDIVKSINDLNSKITITEQKEYNKEGDIANIFKQIKAQKSGK*