Scaffold Ga0114932_10003560

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10003560
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15151
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F050009	Metagenome	146	N
F085808	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000356019	F050009	GAGG	MNLPRGKQGGINYGQKKQEGQSDTEQLIDIANYLRKKYKVNIKREIYMTFDIETEKIIKIKDHVNKDDLWKDKKPIAFAKNPDLFWIDKYGMWIIEVDGAVHDRKVKKTNERNELFISNYIKLIVVNLADLKELRINIYDYIDQRIKELI*
Ga0114932_100035604	F015345	N/A	MTTVDIFGIKERIVSILKADTTNLWDSTPSSKTKFRKIEAGSPSPKAIQEPPLPRLWVTSDDTVAIVRPLGVIASNISKGEEYEIRIKILFVVEAKDGPATEEDIDDFTKSIINQLEANYDLRTDGGAESTRVAESSQVTSIQNLPGIFRGDRVRGRSIHFKVIVRA*
Ga0114932_100035608	F085808	GAGG	MTNAALWQVQSGAGTGAEATAGDTHTIDFNATTKVPSDGPFISDISVDFRRSVPENEAVAADNNELQDMGIDGLDITLEGIIGDADNDVTANSVNKLSKWLQDGNTVTGYTKGRFGLRLDNAPQWNVVPTTTYGYHIRDIKLQYMGENRDLVHFTIRLALGGDVASAI*