Basic Information | |
---|---|
Taxon OID | 3300009481 Open in IMG/M |
Scaffold ID | Ga0114932_10002720 Open in IMG/M |
Source Dataset Name | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 18258 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (76.32%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Kolumbo volcano, Aegean Sea | |||||||
Coordinates | Lat. (o) | 36.5264 | Long. (o) | 25.4868 | Alt. (m) | Depth (m) | 470 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F034957 | Metagenome | 173 | Y |
F060033 | Metagenome | 133 | Y |
F065106 | Metagenome / Metatranscriptome | 128 | N |
F077387 | Metagenome | 117 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114932_1000272019 | F077387 | GAGG | MENNPRTLNTDYDAWLRRLQVEQLKKFYRTFQAILAGQCNDDIDVVRGKIFKLCAAMGEDVYGTMEQIHDELYGIE* |
Ga0114932_1000272022 | F065106 | GGAG | MITEYVAKPNLNNNIGLKTFSLESDAIKYLEEYTGYEMSFEKNKKTGEKTSDWYLIDKLVKVEK* |
Ga0114932_1000272032 | F034957 | GAGG | MPGQNFINGPPNPRGKEEYTLDGKIPIKHQSESLIMKYTGLKWLVENPKAPFVWFAIGISLIFYIEGF* |
Ga0114932_1000272035 | F060033 | AGGGGG | MIYGYYLIMVMMLPTGDVHGEVLDWYFTPHECIEEAQYYHENKSHLGVGYVCIEDVYPVKERDLDE* |
⦗Top⦘ |