Scaffold Ga0114932_10002720

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10002720
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18258
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034957	Metagenome	173	Y
F060033	Metagenome	133	Y
F065106	Metagenome / Metatranscriptome	128	N
F077387	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000272019	F077387	GAGG	MENNPRTLNTDYDAWLRRLQVEQLKKFYRTFQAILAGQCNDDIDVVRGKIFKLCAAMGEDVYGTMEQIHDELYGIE*
Ga0114932_1000272022	F065106	GGAG	MITEYVAKPNLNNNIGLKTFSLESDAIKYLEEYTGYEMSFEKNKKTGEKTSDWYLIDKLVKVEK*
Ga0114932_1000272032	F034957	GAGG	MPGQNFINGPPNPRGKEEYTLDGKIPIKHQSESLIMKYTGLKWLVENPKAPFVWFAIGISLIFYIEGF*
Ga0114932_1000272035	F060033	AGGGGG	MIYGYYLIMVMMLPTGDVHGEVLDWYFTPHECIEEAQYYHENKSHLGVGYVCIEDVYPVKERDLDE*