Scaffold Ga0114932_10002630

Overview

Basic Information

• Taxon OID: 3300009481
• Scaffold ID: Ga0114932_10002630
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18661
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (82.50%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008925	Metagenome	326	Y
F013187	Metagenome	273	Y
F023748	Metagenome	209	Y
F024676	Metagenome	205	Y
F029779	Metagenome	187	Y
F054940	Metagenome	139	Y
F078603	Metagenome	116	Y
F095588	Metagenome	105	Y
F105336	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114932_1000263011	F078603	N/A	MLYKNILNINERKNKMVRNNLDLAMLITDAILNEFEKNGKCNIPLDESKDSKPYAWDLQDVIQTELEKIAEGDNINDNTKSIGE*
Ga0114932_1000263017	F105336	GGAG	MKLRQHQITRVEQILSDLERKVEEMEQQDYITYDLGKDLENILFMLDKIREEIENE*
Ga0114932_1000263020	F013187	AGGAG	MSKKKPTWVYIYGDECQDIWEHFGFPFPNPNDRMKLKFVKYETKENKDG*
Ga0114932_1000263022	F029779	AGGAG	MMSDKEKYEELCEALVGIDATERYTHEDILSYVYNLKDTEEKFYDNKK*
Ga0114932_1000263023	F008925	AGGAG	MTTKSKPTIDAVTLNLVNKLKQIDDTMNEGAWEYIHLGDILRLQDAFHKAIRHYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPKAFDPSKVEEEDDE*
Ga0114932_1000263025	F023748	GAGG	MMMSEYKYTYKFSEQTVDTRYYKVESNTKLTKSEMQDLAWSVEQTEGETFKCNEGKATFEGTEIGDDAQYKMEEGEEDLADD*
Ga0114932_1000263027	F095588	GAG	MKYKIEMEIDFNKRPTKKDVLNKLFDMLRDNKVEYKLHKYNNNLWEQIKRSIKNDKHK*
Ga0114932_1000263028	F024676	AGG	MENVMYNKTNVKKQMFVIAMPYPKNKKLPDILEEEDGQVMYFKKEKDAITFLQNLYDERNIHIQALIDDNIKIMRVQ*
Ga0114932_1000263031	F054940	GAG	MNLLEQEIKELIKERYYEYLEEGYESFEAMELAKRDIYETKEVEIHTYNKIYDSSFEVD*