NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115555_1123605

Scaffold Ga0115555_1123605


Overview

Basic Information
Taxon OID3300009476 Open in IMG/M
Scaffold IDGa0115555_1123605 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110407
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1099
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009291Metagenome / Metatranscriptome320N
F104466Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0115555_11236051F104466GAGGMATRKINEDALIKKVFKKVNKDLGVDAKTPPSQMKSFNEKLKATPTPFLYRIKDVWKAFAALMAGFFTIGFIIARLTIPSETVMLTASVSPDIYDFNTFDSDGDGEWTLAETQVAKEALAIRQFEYADNNQDAKLSFEESKKAVNGISQGQFIAL
Ga0115555_11236052F009291N/AMTITPDQFKEIMRLFDAGDFESRKEAVSILYEGFSRHYLIVIKRDFMFNKYDDAMAEEVLQDVFLSLLTKQTKPSSAFAISAWLKSYVFNVTRDRMKKSGFEVLPDDPDSGGDIPSNPGDSTMIEKCMEEVIKECGKDDPEGAELFSKVKVEGYAYSELTNIYGKTVSNLKKIVSEFNTMLKELIQPCLERAK*

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