NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115555_1009429

Scaffold Ga0115555_1009429


Overview

Basic Information
Taxon OID3300009476 Open in IMG/M
Scaffold IDGa0115555_1009429 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110407
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5576
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010480Metagenome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0115555_10094291F010480N/AQKIEILSIDDQKSKTIYDNIIRMNKLQNVVPLMYNSNIGTTLLGYKDIRDIRKFLKAEPIDYKKPLTALPHFDIKNSSIKDLDNWKKDVILWYETNKANLPSNIVDKEKMIDMVYKQFMAYRTKPLTIEERFSKLEEQSQEYDVRYEKMNKELKNLKLQIKKLKRLK*

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