Scaffold Ga0115554_1039464

Overview

Basic Information

• Taxon OID: 3300009472
• Scaffold ID: Ga0115554_1039464
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2216
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026152	Metagenome	199	Y
F042572	Metagenome / Metatranscriptome	158	Y
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115554_10394642	F042572	AGG	MLINLVYQEIDRRTMSRNLIVYKVEYRLKSDPWERGKFIKTKRIVMTPDEVDQTDGYWRNHRNVRSKFYKQMGDNYYVWSVKKA*
Ga0115554_10394643	F026152	GGAG	MKKTKLGTPKFWTAKAWADHLVWISGFTNNKEVNYVQSNNRRKVSRKSNKSKQSNQASV*
Ga0115554_10394647	F050676	AGGAGG	MQTKLPVKSRVADKYQPMLTYYAELIGLCHETVTKTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIANKLETVSKATEERKAVNE*
Ga0115554_10394648	F054358	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVRVLYEDHAKFANEMDSILLQKKGKLDNAIHVLEDKL