Scaffold Ga0126447_1000164

Overview

Basic Information

• Taxon OID: 3300009470
• Scaffold ID: Ga0126447_1000164
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, surface; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18077
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015587	Metagenome	253	Y
F021097	Metagenome	220	Y
F030408	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126447_100016411	F030408	AGG	MSLPPPPNTTMTFRVALVTDRSGRYAHVWGEPRSWDLFVDQLEDAGCEVIEDQTEDWDGCTKDEVAKDCLAVHQLLHDTDFIPH*
Ga0126447_10001646	F015587	N/A	MTKLNIRKNIAAALVNTAAAVENAKMPTKADVGSKLHDIRCRTAALMMPNDMAFIITPKAGN*
Ga0126447_10001647	F021097	AGG	MTRNHFADSCVAIVIGLGTGLLLSVGAQKRLNKHYQATCHDTPGHNLIYVQGFLGDTYYCINSKYVN*