Scaffold Ga0127401_1000627

Overview

Basic Information

• Taxon OID: 3300009469
• Scaffold ID: Ga0127401_1000627
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 6m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8588
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F022608	Metagenome / Metatranscriptome	213	Y
F026826	Metagenome / Metatranscriptome	196	N
F044367	Metagenome	154	N
F071015	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0127401_100062713	F044367	N/A	MKEQILKVGTILMPLGFMVALVDCKVYAAINFIIGFVCLLELIDLKLKEKNKPKS*
Ga0127401_100062714	F071015	N/A	MNRLQITFAPKDFTAGSEWLEKTSSKLGFSYDIYQDIYDTEDMLYTIEKELELSGLNYNLY*
Ga0127401_100062719	F001283	N/A	MTDQEAKEILNKPAICKEAERSVRDMKIKLAKYSGDKTEQTKHLQNLDNLINLAYKQAVDIDAYEELLATYLFKMGEQQAKIRELCELNAMANKIVKL*
Ga0127401_10006272	F022608	N/A	MDRVYIELLQKDSLLEQAHLSNSKEVLLYQVIDSAKKDIESLQSLVYAIDSENLGLHLENENQKTQIRTNRTISFISVITLFLFIAL*
Ga0127401_10006278	F026826	GAG	LKLKKTKIKYNMQFQPYIGKQLTRAIKANTTRAERQVVAERHIISVHTLNTVISGERKITNFNEPALTDIIKVAIRNANNNGKTLADYYQQKEAAEATSLNNH*