Scaffold Ga0126448_1004602

Overview

Basic Information

• Taxon OID: 3300009466
• Scaffold ID: Ga0126448_1004602
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3689
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_10046025	F047062	N/A	MNYDSENYFDQEVDFHYEGQDYRWIGDYTIDYFGEDETEFAPAYGEIEVKITHTSSLSSYEDGAEIIPTPSILMAVELEIESNQ*
Ga0126448_10046026	F008081	N/A	MEESEIINPFGYGKASKVIDENRKPAEWWWDYLEMNEAVAENEFYILFEDGLLVKKGRSKFRTSQYIKGDRFTSFRQTYERD*
Ga0126448_10046028	F036704	N/A	MWIEIDVMLSGSTMDWADLGLEVKHEFVRRMVRVHDIAYVQELVHDIQIIFFYDKTSCLIRGSYQEIRDEILHLDQEDDDLEV*
Ga0126448_10046029	F001775	N/A	MIDSEKTKVSAASFLIGVIVAIVLFPKKEVETIYKTTTKIKTDTIYVASTDTIYIPKTKIKTEFIRDTILIDFKPQIKRFETLYPFDYGSTRVSGEVLGEVLKMTAINDYTIPVVTNTITETKTETIIKKSKGFYLGANVNSALNLGASASYVDDKYLFSYQYQPMQRVHQIGVSKKLF*