Basic Information | |
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Taxon OID | 3300009466 Open in IMG/M |
Scaffold ID | Ga0126448_1002970 Open in IMG/M |
Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Marine Biological Laboratory |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4698 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
Source Dataset Sampling Location | ||||||||
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Location Name | Falmouth, Massachusetts | |||||||
Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008358 | Metagenome / Metatranscriptome | 334 | Y |
F037191 | Metagenome / Metatranscriptome | 168 | Y |
F058114 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126448_100297014 | F008358 | N/A | LHFCIAYLILTDQSVAKAFYMLTQLIRVEYEKIKWWILYNPRNPIVKYLMWKKSMKLAKELMDELESKNKPK* |
Ga0126448_10029703 | F037191 | GGAGG | MTVAEMIEKLHQYPHDMEVQVTDGFQYKFYKGNFEFQMFEDLDGSTFVDIGVGGYDYD* |
Ga0126448_10029704 | F058114 | GAGG | MIEITFTREELRHLHEFLLKNHLQVKQSVIDKIEYEVIADQIFELLGDLECLDPALDEEWQNKLWYDDPEDEYTIAVKRNRDLWNRQTIAELKTLIGKLEAK* |
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