Scaffold Ga0126448_1002970

Overview

Basic Information

• Taxon OID: 3300009466
• Scaffold ID: Ga0126448_1002970
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4698
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008358	Metagenome / Metatranscriptome	334	Y
F037191	Metagenome / Metatranscriptome	168	Y
F058114	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_100297014	F008358	N/A	LHFCIAYLILTDQSVAKAFYMLTQLIRVEYEKIKWWILYNPRNPIVKYLMWKKSMKLAKELMDELESKNKPK*
Ga0126448_10029703	F037191	GGAGG	MTVAEMIEKLHQYPHDMEVQVTDGFQYKFYKGNFEFQMFEDLDGSTFVDIGVGGYDYD*
Ga0126448_10029704	F058114	GAGG	MIEITFTREELRHLHEFLLKNHLQVKQSVIDKIEYEVIADQIFELLGDLECLDPALDEEWQNKLWYDDPEDEYTIAVKRNRDLWNRQTIAELKTLIGKLEAK*