Scaffold Ga0126448_1002141

Overview

Basic Information

• Taxon OID: 3300009466
• Scaffold ID: Ga0126448_1002141
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5630
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045060	Metagenome / Metatranscriptome	153	Y
F070039	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_10021412	F070039	AGG	VTPALIELFVDRLCGMYPTTNIARNTVKNAWVKDDLLLDASEDDAKTVLKMCESLGHYPNQFEVKMMFNKVMGVRNAEIGCDDCEGTGFVYTDPDFSGDYKQRFVRTCKCRAA*
Ga0126448_10021415	F045060	GGAGG	MNYDEWAAIGHANGWLGVRRNNGATSKAGAQSLTVRAGSQRAKLLATYYAHYYLTDEEAGNVSGLASLPKCCYWKRCSELRQAGYIKPNGKTRISSAGVEQQVCHITAEGIQVLANIA*