Scaffold Ga0126448_1000560

Overview

Basic Information

• Taxon OID: 3300009466
• Scaffold ID: Ga0126448_1000560
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11219
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (24.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013631	Metagenome / Metatranscriptome	269	Y
F027828	Metagenome / Metatranscriptome	193	Y
F073458	Metagenome / Metatranscriptome	120	Y
F082582	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_100056016	F013631	N/A	MPYNTGTQAKETMTVLDVFHYTASRWDWQDGNVNQMWIQEIEHSPDYYSYVAVAYNPRKNTSMVMSQPRCYADTLNFVRSFCASFCILPQYC*
Ga0126448_100056023	F027828	N/A	MELTTKTMLDTVLMMEEILTEKQLTALQDILYFYKEFELELYDYPQEDTLFTQTQRELFDIFDIK*
Ga0126448_100056033	F082582	N/A	MTVDFSKDVMLGMLSKGQTGTQILDILNVLVPDEVVEMTREYVCDQLGIADCPENDDEIEAYLAAV*
Ga0126448_10005605	F073458	N/A	MSDKLIALAAEIVDTNPAGAQLVVNLTNAETGADLIEALDNYDSTVLENHTQPVDSEDDSYVSLTDADGTVTYV*