Scaffold Ga0126448

Basic Information
Taxon OID	3300009466 Open in IMG/M
Scaffold ID	Ga0126448_1000211 Open in IMG/M
Source Dataset Name	Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Marine Biological Laboratory
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Marine Biological Laboratory

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18594
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (46.15%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

18594

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (46.15%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Ecosystem

Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location Name	Falmouth, Massachusetts
Coordinates	Lat. (^o)	41.548517	Long. (^o)	-70.622961	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Falmouth, Massachusetts

Coordinates

Lat. (^o)

41.548517

Long. (^o)

-70.622961

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F025263	Metagenome / Metatranscriptome	202	Y
F099215	Metagenome	103	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_100021110	F099215	N/A	VGYIPLSNYKYDTGLHRLQSGPISEGYIVVSSGIVDTGADLGIVTSGPMTSGVYSTTAWRAVPPAISGYWTDFQDSDYQASGVLGVYNGYRALSVTTIANAKVQTSIGPEFGLRDAGKYTYFGGAAPDNQNYTPYNTPESNTSAQGRTGGGVTHGRYEGGLLTNSLGSQGTSNRSEWVYNPPVYCKTYTETVRSTVPGLMSTALRSVYRGGAARYVSNYGSIYLQNSESVRNLVRNFSPSVNSSNQKSI*
Ga0126448_10002112	F001215	GAG	MASTSTNKQPCLVDRPFLRGARITSSTPVADPTNPNLTDLVQLVRVGDLPSEDAALVEDIAIVSNEDYPDNSGMRTVDIGFYVYMPNQAAPSTSSALMVGRVEVGLSGSTVGYPQSVQLLATNAPTPQTGNTALAAPIELGKSEGLYLEKGYILCAGYLGEGNAAISGGLSPSGITVLAQGGFY*
Ga0126448_10002118	F025263	AGGAGG	MAINSNQLQVAKIYPGNYTNVLRYWHEEKSVVFNNENGTSETLTNQPIGGPVGVVFRPGWIAQQAIGYVDLSYQALGTNNQLDYYTQPYGSGLNGSNQAFSSANVIIPSPDFHKDIRSDITDGIKVPAGAYVYRASLRVDGGDVISSGVGGGSATPQLTLVPAMNQGLRSDGTVVSGQFGVSVTGSSSRIENGSNASVNIINSNNLSALAAETTWKLFATRNLGGVVASGLTLASGTFDPRAGVGSLKGKDKALAVCEVCWIVPDSAPKRDDLALQPGGVVESTVYTSTVPS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0126448_1000211

Overview

Ecosystem & Geography

Associated Families

Sequences