Scaffold Ga0126448_1000012

Overview

Basic Information

• Taxon OID: 3300009466
• Scaffold ID: Ga0126448_1000012
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 2m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66297
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (40.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024298	Metagenome / Metatranscriptome	206	Y
F030930	Metagenome / Metatranscriptome	184	N
F065740	Metagenome / Metatranscriptome	127	N
F087062	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126448_100001218	F024298	GAGG	VITEHATAEHFARWESHAVTLDAYSLRYIVADCHQAAAGMAGWNPAREGYYLDQAATYGMELTRRNRQLPAALRHR*
Ga0126448_100001241	F030930	AGGA	MYIYLILTVVHEVPSEDLVANRYCVGFSLDDPLFHGFDVDRWAEPKMRAILMRSLCEDWADGALLITGCEEIAGAVQWGSPQAAIL*
Ga0126448_10000125	F087062	N/A	MTDPAFNLLQLERRPNWYDHLGAAEAAMREQDRIDSIRSRAGWSGDEGGWYSPDGVHESEWELEARPFPEDEGYADFWSAYIHYEALDSAPTP*
Ga0126448_100001260	F065740	AGG	MSTFAFVNYARFTQSDGTATSPVHAYQNFSVNQPRIYGGVTYQFVPFAVSTGAGSKGGDRSEATLGAGTNAITVNVFAEAVNSGWLLELKTVSLNPETFADTALIRTEIWRVARYEMDTEKILLKLTSPLDAVREQVPNRYLNTRLVGALPTSATLVVS*