Scaffold Ga0127402_1024814

Overview

Basic Information

• Taxon OID: 3300009451
• Scaffold ID: Ga0127402_1024814
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1414
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014004	Metagenome / Metatranscriptome	266	Y
F029416	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127402_10248142	F029416	GAG	MPDTLSRNIYRALFSDDQWDLIYAMSGHALDNDDFTPEDVYSIRNKIHSLFDYND*
Ga0127402_10248145	F014004	N/A	MKNLTLQVTEVRFDFDDLDFTLEEQQAVLNDVLGNVFEVEVDDGYDDEVVADALVEEVTDYAGWCVCSLDFVHVLNTH*