Scaffold Ga0127402_1000105

Overview

Basic Information

• Taxon OID: 3300009451
• Scaffold ID: Ga0127402_1000105
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 8m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21000
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046378	Metagenome	151	Y
F091916	Metagenome / Metatranscriptome	107	Y
F100404	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0127402_10001053	F046378	N/A	VIEGFPYPEKICPYCFKKMTVVNAIHWEGDKYQYKALYLDPNPECPVYDEGAMQAYARIYYSSEDAYAYYHDVKIPVQRWGRDDLYSIYQ*
Ga0127402_10001055	F091916	AGGAG	MKDNMKKMVSDHNAMKSWHETAAKTAAEQMQDHIKAAAWHDSQVNLIKGMINEVPLDPEKKVSGVPTAGSASAPTSGAGMTSPKKEVPLDPNTVKKSDLVEILSEHEEQFGKFDMPVEDIASFLLAE*
Ga0127402_10001057	F100404	GAG	MSDENFIEEDNTFIGTKAFDDICDKLISKVSNPDNHREAYSVIYGHYKGWAPSKTIKHYNITETAYNYYAGLFEFTERGEKIMAGRKSKQDNIVNFLTGNVGKVVTPIEVSTNVDISLPTFYNFYNANRGYFKKVKRGHFEIVDPKVERANS*