NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0127391_1003442

Scaffold Ga0127391_1003442


Overview

Basic Information
Taxon OID3300009450 Open in IMG/M
Scaffold IDGa0127391_1003442 Open in IMG/M
Source Dataset NameAquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3559
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location
Location NameFalmouth, Massachusetts
CoordinatesLat. (o)41.548517Long. (o)-70.622961Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025485Metagenome / Metatranscriptome201Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0127391_10034424F025485N/AMNNARKFLPIIIGSLVAFIVFWISRKMRKSNTANQERFTILEKAREAKLAKSILKKSENEESPTYSEISA*
Ga0127391_10034427F031456N/AMSQIGSFPASGSAVFNLDFLPEKFLIDSTDAVNQFLTNFSVVTSGVQLMSITDVDRLTALAKFDSGAILSDPSATNISTSSSYLRLATGRINKATTITGTNGVAANLAAYAASTNISNIARRAVEQSINPSANATFDNFEALFFLPTNILRAQITFANGFTDEYTVRELQALYSNYHVADFSGNLQGLICIAADSGAGLISQVVLYNGAGGTTVVLKSDYVEL*

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