Scaffold Ga0127391_1001591

Overview

Basic Information

• Taxon OID: 3300009450
• Scaffold ID: Ga0127391_1001591
• Source Dataset Name: Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5110
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (37.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts

Source Dataset Sampling Location

• Location Name: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.548517
  • Long. (^o): -70.622961
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001165	Metagenome / Metatranscriptome	760	Y
F001807	Metagenome / Metatranscriptome	631	Y
F015201	Metagenome / Metatranscriptome	256	Y
F020342	Metagenome / Metatranscriptome	224	Y
F056537	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127391_10015911	F001165	N/A	MTDNTPRIPDSMDMQRLEAMQLVARMKESAEKHGLGFIGGFVSPDGEKFVMTNMDHTDAMALMPEDLK*
Ga0127391_100159113	F015201	GGAGG	MNKALIVYLVNQKKKQARKDVESLHAVTELKKQSAATF*
Ga0127391_100159114	F056537	N/A	MMNDIMYNNRHILSVSIDTKAMTLTYRGCKYNQEDQAKANRNWWNLAHRPWLCLTYRNICYFPYVTGGQIK*
Ga0127391_10015913	F020342	N/A	MSAVTDNINMFDRINLAACAERRASANVLNSTRWNGEYDTARLWMKYRLVKYTTYSYIDED*
Ga0127391_10015914	F001807	N/A	MTVLAIEDTSFTDTHVTVTAVVDEMRLLYRATHLDPEEWAPALCQATIELDPEEPIPLDEDGFCSYLDQLDPQWQVLNSDDI*