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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009450 Open in IMG/M |
| Scaffold ID | Ga0127391_1000241 Open in IMG/M |
| Source Dataset Name | Aquatic microbial communities from different depth of meromictic Siders Pond, Falmouth, Massachusetts; Cast 1, 4m depth; DNA IDBA-UD |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Marine Biological Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11173 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Meromictic Pond → Aquatic Microbial Communities From Different Depth Of Meromictic Siders Pond, Falmouth, Massachusetts |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Falmouth, Massachusetts | |||||||
| Coordinates | Lat. (o) | 41.548517 | Long. (o) | -70.622961 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024819 | Metagenome / Metatranscriptome | 204 | Y |
| F033006 | Metagenome / Metatranscriptome | 178 | Y |
| F073287 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0127391_10002413 | F024819 | GAG | MKKFNTAIDNAMRILAEELEDSDSQICTGWVLVSEWSDFEGTRYLMTDVSENMNPWLAKGMLLGAEEYSYTPEEN* |
| Ga0127391_10002415 | F033006 | GGAG | MRWMENTFFDHLDKFGNSLGYDNFGIAFTLSMIPWQSPTDRDDFIREITNEDVKGGEPSTFNPEYLEF* |
| Ga0127391_10002417 | F073287 | GGAGG | MTRYRDAAGIPDPKAELQGLKEDLAAKGSSKKTINYIWMPDKDGNLVKKDSAFIKKSFSTLSKSAQRILAEYVIAVQNRQPSDAARKTVFNTLIDAAVASYKEGKKQTPWDILEVQLKNAPQTSDTKITYTDYDKFTADAILSQAAKAIGFSQGPFAQFGESDLADFYEKLTEAAKASGKQTKVVVRPDGTEETIVSGSAFDANAFAKNYLWAKVNIGDPKTLPTSVINQIDSLRSIVKANGLGYLSEKELANYAVQLSRGEVDLTSLQKEFNAKAAELYPLFGDRLRANPSLTVLDLVQPYISRMAKWWDIDPSTIDLDNPDLDKFIRPDGTAGKAQMGSLADWDNYLKLHPKADEATWAIEGARDLATGFARVAGFGV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |