Scaffold Ga0115560_1131157

Overview

Basic Information

• Taxon OID: 3300009447
• Scaffold ID: Ga0115560_1131157
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1006
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032043	Metagenome	181	N
F096057	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115560_11311571	F032043	N/A	QKDFRCVGSGHHEKSDNTAERFGNKDLRGNNGMQKKVIDNLTQPEDMMYSMLMMPRR*
Ga0115560_11311575	F096057	AGG	MMGMKKKDKKAMGYMGGGMAKKPMKMMGGGMAKKSMG