Scaffold Ga0115560_1004627

Overview

Basic Information

• Taxon OID: 3300009447
• Scaffold ID: Ga0115560_1004627
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8135
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014903	Metagenome / Metatranscriptome	259	Y
F067110	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115560_100462717	F014903	GGAG	MENDITNIRYVEMTFDHTISFYIQEIADANNFVTDDIKEVECGKWAHLHITLKDGRIITEDGCTYGEVDMKWASEEHLYDEKYRELI*
Ga0115560_100462718	F067110	N/A	IVGEAVKRGYYYGIDCGEGYEFTSEYFFQHPTQDLDLLCNQKPEDQYIGMDNLDEGHIFFFTKEQADRLNNAVGKVKFDHEIWKSEEEEDNGDYYEGWIMWSNWNDGVERVCDYTTNLDDLIGLRETTDKWEEMVTEFTNKL*