Basic Information | |
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Taxon OID | 3300009445 Open in IMG/M |
Scaffold ID | Ga0115553_1153768 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 941 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED41 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000499 | Metagenome / Metatranscriptome | 1074 | Y |
F022776 | Metagenome | 213 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0115553_11537681 | F022776 | N/A | DGSLIKGFSDVKTESYRLAYEIHKDKHTTFGWSFSLPSHVTSGSMDLEVAESVNLDGTLNYTNFSSDLTQSTKEKNLGFFYSKTAEDDLDASFNFSAEYRQDVSGQDGKDGVNLAMNYVKKFNGACGFLFWKNPKCYNADGTKKDMKALYAAQGKEVDNATKHGLVYDLETDMFVPIKK* |
Ga0115553_11537682 | F000499 | N/A | MQKEIHKENYFGTLMSILVDESRRIMPTFMPTPELHKIQNDMCLAGSWIDKMPVGTIVETVPQDSIKKLVEDALPEYRRLAANLIDRFIDEFEAQGGRRTEITEKFERMYKWKQ* |
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