NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115557_1147324

Scaffold Ga0115557_1147324


Overview

Basic Information
Taxon OID3300009443 Open in IMG/M
Scaffold IDGa0115557_1147324 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110421
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)954
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076876Metagenome117N
F096042Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0115557_11473242F096042GGALNIRDKIKKASALRNKAAYIQAAKNRFGFKVEGKGTYIWTSEEAENESAMWKAENNLSKKCIKKEVKSYELKVVDNNNFWVITELDGTVIVIDTIEYTMAYYMRPRTKKAKVRDWKLPHKCYGYWDCFPDKVKAIEEKDLAEMEAEGYTDSYYRWLLDRNKLLEETFN*
Ga0115557_11473243F076876N/ALKKHSTKEKDMKKTNRFYAALITMTFGFSLISNVSAEDKNFLWESDGSLTIVDGAKDSGYIIEDGEVKTYVIPSDTEKTFIHDGSSGELIVCDPAIGCY*

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