NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115563_1197943

Scaffold Ga0115563_1197943


Overview

Basic Information
Taxon OID3300009442 Open in IMG/M
Scaffold IDGa0115563_1197943 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110519
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)774
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016497Metagenome / Metatranscriptome246N
F081863Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0115563_11979431F081863GAGGMSGFSFIFIKMLHFLLMAISSLQFKEIMRLFDAGDFESRKEAVSMLYEGYSRHYLIVIKRDFMHNNYDDDTAEEVLQDTFLSLLSKQTKPSSEFAISAWLKGYVFNVARDNLK
Ga0115563_11979432F016497GGAMKPKKLEDKKLEEITVNDMMLTPMGCKIVAESCIKVLAEQIGKWSEEYPEQRENFQADVEVLWRTLGLLNKCDFLFKDPEQKEEDLAA*

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