Scaffold Ga0115007_10061486

Overview

Basic Information

• Taxon OID: 3300009441
• Scaffold ID: Ga0115007_10061486
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2357
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028319	Metagenome / Metatranscriptome	192	Y
F044157	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115007_100614861	F028319	N/A	RQITPRYMYHSYNYLCEENMTPQEISEYKMRWMSKEETYLVRLHSDLHIDGKYWCRKYLERHQWGMNTWTNVYEHTFYFEDNTQAKRFEQQWPEYTNQ*
Ga0115007_100614866	F044157	AGG	MNILHNFLIPEAKHRDAFWAKQPTNDPYSINGFNGTFAFSDHLLIPEGITEFLLEYFHKKCFKTAISWRKNHISSIPLEEINELMNELWDGPGSMSKLSIMTNEMRLARLWEDEEPNLDFKSYYTPTYESNIGKSAVD*